Pseudomonas putida S16, PPS_3806

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_3806
Name
Replicon chromosome
Genomic location 4291651 - 4292709 (+ strand)

Cross-References

RefSeq YP_004703227.1
GI 339488699
Entrez 10939430
INSDC AEJ14347.1
NCBI Locus Tag PPS_3806
UniParc UPI0002173A97
UniProtKB Acc F8FWI2
UniProtKB ID F8FWI2_PSEP6
UniRef100 UniRef100_V9X112
UniRef50 UniRef50_Q5SLR3
UniRef90 UniRef90_P09061

Product

Feature Type CDS
Coding Frame 1
Product Name
transketolase, central region
Synonyms
Evidence for Translation
Charge (pH 7) -11.81
Kyte-Doolittle Hydrophobicity Value -0.145
Molecular Weight (kDa) 38.6
Isoelectric Point (pI) 4.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2BP7 OXIDOREDUCTASE 04/18/05 New crystal form of the Pseudomonas putida branched-chain dehydrogenase (E1) PSEUDOMONAS PUTIDA 2.9 X-RAY DIFFRACTION 98.2
1QS0 OXIDOREDUCTASE 06/24/99 Crystal Structure of Pseudomonas Putida 2-oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1B) Pseudomonas putida 2.4 X-RAY DIFFRACTION 98.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 553 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002214 (793 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_3806

Human Homologs

Ensembl 110, assembly GRCh38.p14
branched chain keto acid dehydrogenase E1 subunit beta [Source:HGNC Symbol;Acc:HGNC:987]
E-value: 1.2e-79
Percent Identity: 46.8
Ensembl 110, assembly GRCh38.p14
branched chain keto acid dehydrogenase E1 subunit beta [Source:HGNC Symbol;Acc:HGNC:987]
E-value: 1.2e-79
Percent Identity: 46.8

References

No references are associated with this feature.