Pseudomonas putida S16, PPS_3905

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_3905
Name
Replicon chromosome
Genomic location 4404712 - 4405248 (- strand)

Cross-References

RefSeq YP_004703326.1
GI 339488798
Entrez 10939529
INSDC AEJ14446.1
NCBI Locus Tag PPS_3905
UniParc UPI0002173DD3
UniProtKB Acc F8FXX3
UniProtKB ID F8FXX3_PSEP6
UniRef100 UniRef100_A0A099N2N6
UniRef50 UniRef50_Q8PGV2
UniRef90 UniRef90_Q88EA7

Product

Feature Type CDS
Coding Frame 1
Product Name
peptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7) -10.65
Kyte-Doolittle Hydrophobicity Value -0.147
Molecular Weight (kDa) 19.9
Isoelectric Point (pI) 4.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 584 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001082 (483 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_3905

Human Homologs

References

No references are associated with this feature.