Pseudomonas putida S16, PPS_3949

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_3949
Name
Replicon	chromosome
Genomic location	4465014 - 4465946 (- strand)

Cross-References

RefSeq	YP_004703370.1
GI	339488842
Entrez	10939573
INSDC	AEJ14490.1
NCBI Locus Tag	PPS_3949
UniParc	UPI0002173EE3
UniProtKB Acc	F8FZ66
UniProtKB ID	F8FZ66_PSEP6
UniRef100	UniRef100_A0A099N2P7
UniRef50	UniRef50_I7B1T2
UniRef90	UniRef90_I7B1T2

Product

Feature Type	CDS
Coding Frame	1
Product Name	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.13
Kyte-Doolittle Hydrophobicity Value	0.016
Molecular Weight (kDa)	34.0
Isoelectric Point (pI)	6.31

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 624 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001240 (513 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_3949 Search term: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000372411 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000436285 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000515195 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000515213 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000515211 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000434630 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000338615 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000515212 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000311825 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000410474 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000357816 C-terminal binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2495] E-value: 5.2e-07 Percent Identity: 29.9
Ensembl 110, assembly GRCh38.p14	ENSP00000290921 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000422148 C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] E-value: 5.2e-07 Percent Identity: 31.1

References