Pseudomonas putida S16, PPS_3955

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_3955
Name
Replicon chromosome
Genomic location 4470117 - 4471298 (- strand)

Cross-References

RefSeq YP_004703376.1
GI 339488848
Entrez 10939579
INSDC AEJ14496.1
NCBI Locus Tag PPS_3955
UniParc UPI0002173EE9
UniProtKB Acc F8FZ72
UniProtKB ID F8FZ72_PSEP6
UniRef100 UniRef100_F8FZ72
UniRef50 UniRef50_B0KSS8
UniRef90 UniRef90_B0KSS8

Product

Feature Type CDS
Coding Frame 1
Product Name
cystathionine gamma-lyase
Synonyms
Evidence for Translation
Charge (pH 7) -3.62
Kyte-Doolittle Hydrophobicity Value 0.043
Molecular Weight (kDa) 42.6
Isoelectric Point (pI) 6.43

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 567 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000391 (846 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_3955

Human Homologs

Ensembl 110, assembly GRCh38.p14
cystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]
E-value: 8.7e-84
Percent Identity: 44.4

References

No references are associated with this feature.