Pseudomonas putida S16, PPS_4745

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4745
Name
Replicon chromosome
Genomic location 5365017 - 5365559 (- strand)

Cross-References

RefSeq YP_004704156.1
GI 339489628
Entrez 10940359
INSDC AEJ15276.1
NCBI Locus Tag PPS_4745
UniParc UPI0002173467
UniProtKB Acc F8FTY5
UniProtKB ID F8FTY5_PSEP6
UniRef100 UniRef100_A0A099N4Z1
UniRef50 UniRef50_Q4KJ81
UniRef90 UniRef90_Q4KJ81

Product

Feature Type CDS
Coding Frame 1
Product Name
oligoribonuclease
Synonyms
Evidence for Translation
Charge (pH 7) -6.14
Kyte-Doolittle Hydrophobicity Value -0.496
Molecular Weight (kDa) 20.8
Isoelectric Point (pI) 5.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 216 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004566 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4745
Search term: oligoribonuclease

Human Homologs

Ensembl 110, assembly GRCh38.p14
RNA exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:17851]
E-value: 7.6e-43
Percent Identity: 47.7

References

No references are associated with this feature.