Pseudomonas putida S16, PPS_5001

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5001
Name
Replicon chromosome
Genomic location 5676377 - 5677297 (- strand)

Cross-References

RefSeq YP_004704408.1
GI 339489880
Entrez 10940611
INSDC AEJ15528.1
NCBI Locus Tag PPS_5001
UniParc UPI0002173D03
UniProtKB Acc F8FY24
UniProtKB ID F8FY24_PSEP6
UniRef100 UniRef100_F8FY24
UniRef50 UniRef50_G8Q0B7
UniRef90 UniRef90_R9VCC7

Product

Feature Type CDS
Coding Frame 1
Product Name
SdiA-regulated domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -13.55
Kyte-Doolittle Hydrophobicity Value -0.334
Molecular Weight (kDa) 34.0
Isoelectric Point (pI) 4.59

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 26 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000316 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5001

Human Homologs

References

No references are associated with this feature.