Pseudomonas putida S16, PPS_5008

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5008
Name
Replicon chromosome
Genomic location 5682876 - 5683517 (- strand)

Cross-References

RefSeq YP_004704415.1
GI 339489887
Entrez 10940618
NCBI Locus Tag PPS_5008

Product

Feature Type CDS
Coding Frame 1
Product Name
2OG-Fe(II) oxygenase
Synonyms
Evidence for Translation
Charge (pH 7) -10.44
Kyte-Doolittle Hydrophobicity Value -0.322
Molecular Weight (kDa) 23955.9
Isoelectric Point (pI) 4.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4J25 OXIDOREDUCTASE 02/04/13 Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) Pseudomonas putida 1.97 X-RAY DIFFRACTION 96.6
4IW3 METAL BINDING PROTEIN/TRANSLATION 01/23/13 Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu) Pseudomonas putida 2.697 X-RAY DIFFRACTION 96.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 83 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000307 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5008

Human Homologs

References

No references are associated with this feature.