Pseudomonas putida S16, PPS_5141

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5141
Name
Replicon chromosome
Genomic location 5835026 - 5835805 (+ strand)

Cross-References

RefSeq YP_004704548.1
GI 339490020
Entrez 10940751
INSDC AEJ15668.1
NCBI Locus Tag PPS_5141
UniParc UPI000000FDA3
UniProtKB Acc F8FZL0
UniProtKB ID F8FZL0_PSEP6
UniRef100 UniRef100_I7CF72
UniRef50 UniRef50_Q49P76
UniRef90 UniRef90_V6JC47

Product

Feature Type CDS
Coding Frame 1
Product Name
exodeoxyribonuclease III Xth
Synonyms
Evidence for Translation
Charge (pH 7) -4.86
Kyte-Doolittle Hydrophobicity Value -0.440
Molecular Weight (kDa) 29.8
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2MYI RNA BINDING PROTEIN 01/25/15 Solution Structure of Crc from P. syringae Lz4W Pseudomonas sp. Lz4W NOT SOLUTION NMR 94.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 499 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004901 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5141

Human Homologs

References

No references are associated with this feature.