Pseudomonas putida S16, PPS_5189

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5189
Name
Replicon chromosome
Genomic location 5883794 - 5884837 (+ strand)

Cross-References

RefSeq YP_004704596.1
GI 339490068
Entrez 10940799
INSDC AEJ15716.1
NCBI Locus Tag PPS_5189
UniParc UPI000217313D
UniProtKB Acc F8G0V4
UniProtKB ID F8G0V4_PSEP6
UniRef100 UniRef100_F8G0V4
UniRef50 UniRef50_Q48935
UniRef90 UniRef90_T2HEA8

Product

Feature Type CDS
Coding Frame 1
Product Name
histone deacetylase superfamily protein
Synonyms
Evidence for Translation
Charge (pH 7) -15.30
Kyte-Doolittle Hydrophobicity Value -0.218
Molecular Weight (kDa) 37.9
Isoelectric Point (pI) 4.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 439 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001330 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5189

Human Homologs

Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 3.9e-19
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 3.9e-19
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 3.9e-19
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 3.9e-19
Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
E-value: 3.9e-19
Percent Identity: 28.8

References

No references are associated with this feature.