Pseudomonas putida BIRD-1, PPUBIRD1_0063 (atpF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_0063
Name
atpF
Replicon chromosome
Genomic location 67967 - 68437 (- strand)

Cross-References

RefSeq YP_005927978.1
GI 386009701
Entrez 12518295
NCBI Locus Tag PPUBIRD1_0063

Product

Feature Type CDS
Coding Frame 1
Product Name
AtpF
Synonyms
Evidence for Translation
Charge (pH 7) -1.79
Kyte-Doolittle Hydrophobicity Value -0.128
Molecular Weight (kDa) 16.9
Isoelectric Point (pI) 5.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Drugs Targeting this Protein

Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.

Drug Name Source Accession Source DB Version Target Accession Target Description Percent Identity Alignment Length E-Value
4-Amido-4-Carbamoyl-Butyric Acid DB03091 DrugBank 5.1.4 P0ABA0 ATP synthase subunit b 53.8 156 3.6e-36

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 379 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005089 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0063
Search term: atpF
Search term: AtpF

Human Homologs

References

No references are associated with this feature.