Pseudomonas putida BIRD-1, PPUBIRD1_0418
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_0418
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 486566 - 488248 (- strand) |
Cross-References
| RefSeq | YP_005928318.1 |
| GI | 386010041 |
| EC Number | 1.13.12.3 |
| Entrez | 12518645 |
| NCBI Locus Tag | PPUBIRD1_0418 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Amine oxidase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -10.56 |
| Kyte-Doolittle Hydrophobicity Value | -0.304 |
| Molecular Weight (kDa) | 62.4 |
| Isoelectric Point (pI) | 6.01 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3WE0 | OXIDOREDUCTASE | 06/26/13 | L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 | Pseudomonas sp. | 1.9 | X-RAY DIFFRACTION | 93.9 |
| 5YB6 | OXIDOREDUCTASE | 09/03/17 | L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-lysine complex | Pseudomonas sp. AIU 813 | 2.1 | X-RAY DIFFRACTION | 93.9 |
| 5YB8 | OXIDOREDUCTASE | 09/03/17 | L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-arginine complex | Pseudomonas sp. AIU 813 | 2.3 | X-RAY DIFFRACTION | 93.9 |
| 5YB7 | OXIDOREDUCTASE | 09/03/17 | L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-ornithine complex | Pseudomonas sp. AIU 813 | 2 | X-RAY DIFFRACTION | 93.9 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 60 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG015101 (190 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0418
Search term: Amine oxidase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094]
E-value:
2.2e-16
Percent Identity:
23.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094]
E-value:
2.2e-16
Percent Identity:
23.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094]
E-value:
2.2e-16
Percent Identity:
23.4
|
References
No references are associated with this feature.