Pseudomonas putida BIRD-1, PPUBIRD1_0492 (rplD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_0492
Name
rplD
Replicon chromosome
Genomic location 574972 - 575574 (+ strand)

Cross-References

RefSeq YP_005928391.1
GI 386010114
Entrez 12518726
NCBI Locus Tag PPUBIRD1_0492

Product

Feature Type CDS
Coding Frame 1
Product Name
protein RplD
Synonyms
Evidence for Translation
Charge (pH 7) 7.71
Kyte-Doolittle Hydrophobicity Value -0.288
Molecular Weight (kDa) 21.8
Isoelectric Point (pI) 10.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001448 (528 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0492
Search term: rplD
Search term: protein RplD

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4

References

No references are associated with this feature.