Pseudomonas putida BIRD-1, PPUBIRD1_1997

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_1997
Name
Replicon chromosome
Genomic location 2250179 - 2250538 (- strand)

Cross-References

RefSeq YP_005929850.1
GI 386011573
Entrez 12520214
NCBI Locus Tag PPUBIRD1_1997

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) 9.47
Kyte-Doolittle Hydrophobicity Value -0.765
Molecular Weight (kDa) 13.5
Isoelectric Point (pI) 10.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5B52 TRANSCRIPTION 04/21/16 Crystal structure of the N-terminal domain of H-NS family protein TurB Pseudomonas putida (strain KT2440) 2.3 X-RAY DIFFRACTION 98.4
8H8H TRANSCRIPTION 10/22/22 Crystal structure of the N-terminal domain of H-NS family protein TurB (TurB_nt50) Pseudomonas putida KT2440 2.7 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 6 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002890 (507 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_1997

Human Homologs

References

No references are associated with this feature.