Pseudomonas putida BIRD-1, PPUBIRD1_2023
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_2023
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2278605 - 2279858 (+ strand) |
Cross-References
| RefSeq | YP_005929876.1 |
| GI | 386011599 |
| Entrez | 12520240 |
| NCBI Locus Tag | PPUBIRD1_2023 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Outer membrane porin
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -6.34 |
| Kyte-Doolittle Hydrophobicity Value | -0.374 |
| Molecular Weight (kDa) | 46.0 |
| Isoelectric Point (pI) | 5.45 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 22 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000239 (1158 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2023
Search term: Outer membrane porin
|
Human Homologs
References
No references are associated with this feature.