Pseudomonas putida BIRD-1, PPUBIRD1_2254
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_2254
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2566695 - 2567594 (- strand) |
Cross-References
| RefSeq | YP_005930095.1 |
| GI | 386011818 |
| EC Number | 4.1.3.4 |
| Entrez | 12520459 |
| NCBI Locus Tag | PPUBIRD1_2254 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Hydroxymethylglutaryl-CoA lyase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -3.95 |
| Kyte-Doolittle Hydrophobicity Value | 0.055 |
| Molecular Weight (kDa) | 31556.5 |
| Isoelectric Point (pI) | 5.69 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 364 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003428 (534 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2254
Search term: Hydroxymethylglutaryl-CoA lyase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
3-hydroxy-3-methylglutaryl-CoA lyase [Source:HGNC Symbol;Acc:HGNC:5005]
E-value:
1.6e-98
Percent Identity:
59.2
|
References
No references are associated with this feature.