Pseudomonas putida BIRD-1, PPUBIRD1_2285

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_2285
Name
Replicon chromosome
Genomic location 2596871 - 2598448 (- strand)

Cross-References

RefSeq YP_005930124.1
GI 386011847
Entrez 12520488
NCBI Locus Tag PPUBIRD1_2285

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) 9.99
Kyte-Doolittle Hydrophobicity Value -0.394
Molecular Weight (kDa) 57803.1
Isoelectric Point (pI) 9.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 667 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001345 (417 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2285
Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 5.3e-28
Percent Identity: 26.0
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 5.3e-28
Percent Identity: 26.0

References

No references are associated with this feature.