Pseudomonas putida BIRD-1, PPUBIRD1_2612
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_2612
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2965770 - 2966426 (- strand) |
Cross-References
| RefSeq | YP_005930442.1 |
| GI | 386012165 |
| EC Number | 2.8.3.5 |
| Entrez | 12520806 |
| NCBI Locus Tag | PPUBIRD1_2612 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
3-oxoacid CoA-transferase subunit B
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -10.58 |
| Kyte-Doolittle Hydrophobicity Value | 0.150 |
| Molecular Weight (kDa) | 23.2 |
| Isoelectric Point (pI) | 4.36 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 277 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003435 (528 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_2612
Search term: 3-oxoacid CoA-transferase subunit B
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
3-oxoacid CoA-transferase 1 [Source:HGNC Symbol;Acc:HGNC:8527]
E-value:
4.0e-54
Percent Identity:
50.2
|
|
Ensembl
110, assembly
GRCh38.p14
|
3-oxoacid CoA-transferase 1 [Source:HGNC Symbol;Acc:HGNC:8527]
E-value:
4.0e-54
Percent Identity:
50.2
|
References
No references are associated with this feature.