Pseudomonas putida BIRD-1, PPUBIRD1_3125

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_3125
Name
Replicon chromosome
Genomic location 3517933 - 3519345 (- strand)

Cross-References

RefSeq YP_005930936.1
GI 386012659
EC Number 4.1.1.25
Entrez 12521300
NCBI Locus Tag PPUBIRD1_3125

Product

Feature Type CDS
Coding Frame 1
Product Name
aromatic-L-amino-acid decarboxylase
Synonyms
Evidence for Translation
Charge (pH 7) -11.70
Kyte-Doolittle Hydrophobicity Value -0.120
Molecular Weight (kDa) 51.7
Isoelectric Point (pI) 5.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7XIN LYASE 04/13/22 Crystal structure of DODC from Pseudomonas Pseudomonas 2 X-RAY DIFFRACTION 98.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 252 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015765 (72 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_3125

Human Homologs

Ensembl 110, assembly GRCh38.p14
histidine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4855]
E-value: 1.1e-88
Percent Identity: 37.4

References

No references are associated with this feature.