Pseudomonas putida BIRD-1, PPUBIRD1_3997 (ispF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_3997
|
| Name |
ispF
|
| Replicon | chromosome |
| Genomic location | 4471952 - 4472425 (- strand) |
Cross-References
| RefSeq | YP_005931785.1 |
| GI | 386013508 |
| EC Number | 4.6.1.12 |
| Entrez | 12522178 |
| NCBI Locus Tag | PPUBIRD1_3997 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
protein IspF
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.88 |
| Kyte-Doolittle Hydrophobicity Value | 0.062 |
| Molecular Weight (kDa) | 16.8 |
| Isoelectric Point (pI) | 6.60 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5B8F | LYASE | 04/20/15 | X-ray Crystal Structure of a 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Pseudomonas aeruginosa | Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) | 1.45 | X-RAY DIFFRACTION | 90.9 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 520 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002047 (537 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_3997
Search term: ispF
Search term: protein IspF
|
Human Homologs
References
No references are associated with this feature.