Pseudomonas putida BIRD-1, PPUBIRD1_4083
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_4083
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4566197 - 4566739 (- strand) |
Cross-References
| RefSeq | YP_005931870.1 |
| GI | 386013593 |
| Entrez | 12522263 |
| NCBI Locus Tag | PPUBIRD1_4083 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
YaeQ family protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -6.31 |
| Kyte-Doolittle Hydrophobicity Value | -0.416 |
| Molecular Weight (kDa) | 20.7 |
| Isoelectric Point (pI) | 4.80 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 2OT9 | STRUCTURAL GENOMICS, UNKNOWN FUNCTION | 02/07/07 | Crystal structure of YaeQ protein from Pseudomonas syringae | Pseudomonas syringae pv. tomato | 1.97 | X-RAY DIFFRACTION | 91.7 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 118 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001957 (537 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_4083
Search term: YaeQ family protein
|
Human Homologs
References
No references are associated with this feature.