Pseudomonas putida BIRD-1, PPUBIRD1_4411 (truB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_4411
|
| Name |
truB
|
| Replicon | chromosome |
| Genomic location | 4927096 - 4928013 (- strand) |
Cross-References
| RefSeq | YP_005932189.1 |
| GI | 386013912 |
| Entrez | 12522593 |
| NCBI Locus Tag | PPUBIRD1_4411 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
protein TruB
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.91 |
| Kyte-Doolittle Hydrophobicity Value | -0.253 |
| Molecular Weight (kDa) | 33462.7 |
| Isoelectric Point (pI) | 6.07 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004387 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_4411
Search term: truB
Search term: protein TruB
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value:
1.2e-32
Percent Identity:
38.3
|
References
No references are associated with this feature.