Pseudomonas putida BIRD-1, PPUBIRD1_4548
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida BIRD-1
GCF_000183645.1|latest |
| Locus Tag |
PPUBIRD1_4548
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5087665 - 5090199 (- strand) |
Cross-References
| RefSeq | YP_005932316.1 |
| GI | 386014039 |
| Entrez | 12522724 |
| NCBI Locus Tag | PPUBIRD1_4548 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ATP-dependent helicase HrpB
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.47 |
| Kyte-Doolittle Hydrophobicity Value | -0.298 |
| Molecular Weight (kDa) | 93657.0 |
| Isoelectric Point (pI) | 6.69 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001718 (534 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_4548
Search term: ATP-dependent helicase HrpB
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
|
Ensembl
110, assembly
GRCh38.p14
|
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value:
1.8e-65
Percent Identity:
34.4
|
References
No references are associated with this feature.