Pseudomonas putida HB3267, B479_02745

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_02745
Name
Replicon chromosome
Genomic location 650637 - 651887 (+ strand)

Cross-References

RefSeq YP_007227408.1
GI 431800505
Entrez 14286956
INSDC AGA71465.1
NCBI Locus Tag B479_02745
UniParc UPI0002A173F9
UniProtKB Acc L0FEP5
UniProtKB ID L0FEP5_PSEPU
UniRef100 UniRef100_L0FEP5
UniRef50 UniRef50_P17746
UniRef90 UniRef90_Q4K519

Product

Feature Type CDS
Coding Frame 1
Product Name
elongation factor Tu
Synonyms
Evidence for Translation
Charge (pH 7) -8.51
Kyte-Doolittle Hydrophobicity Value -0.149
Molecular Weight (kDa) 45641.0
Isoelectric Point (pI) 5.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4IW3 METAL BINDING PROTEIN/TRANSLATION 01/23/13 Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu) Pseudomonas putida 2.697 X-RAY DIFFRACTION 99.0
4J0Q TRANSLATION 01/31/13 Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu) Pseudomonas putida 2.294 X-RAY DIFFRACTION 99.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001434 (870 members)
Putative Inparalogs 2 predicted inparalogs
elongation factor Tu (B479_02680) 98.5% identity
elongation factor Tu (B479_02685) 100.0% identity

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_02745

Human Homologs

Ensembl 110, assembly GRCh38.p14
Tu translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12420]
E-value: 3.8e-130
Percent Identity: 55.0

References

No references are associated with this feature.