Pseudomonas putida HB3267, B479_02760 (rplD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_02760
Name
rplD
Replicon chromosome
Genomic location 653013 - 653615 (+ strand)

Cross-References

RefSeq YP_007227411.1
GI 431800508
Entrez 14286959
INSDC AGA71468.1
NCBI Locus Tag B479_02760
UniParc UPI0000D78048
UniProtKB Acc L0FEW6
UniProtKB ID L0FEW6_PSEPU
UniRef100 UniRef100_Q1IFW5
UniRef50 UniRef50_P49226
UniRef90 UniRef90_Q889X0

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L4
Synonyms
Evidence for Translation
Charge (pH 7) 7.71
Kyte-Doolittle Hydrophobicity Value -0.301
Molecular Weight (kDa) 21.8
Isoelectric Point (pI) 10.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001448 (528 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_02760
Search term: rplD

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 3.8e-11
Percent Identity: 27.4

References

No references are associated with this feature.