Pseudomonas putida HB3267, B479_17015

Gene Feature Overview

Strain	Pseudomonas putida HB3267 GCF_000325725.1|latest
Locus Tag	B479_17015
Name
Replicon	chromosome
Genomic location	3726564 - 3726824 (+ strand)

Cross-References

RefSeq	YP_007230238.1
GI	431803335
Entrez	14289786
INSDC	AGA74295.1
NCBI Locus Tag	B479_17015
UniParc	UPI0002173FD0
UniProtKB Acc	L0FNQ8
UniProtKB ID	L0FNQ8_PSEPU
UniRef100	UniRef100_A0A099N2Z9
UniRef50	UniRef50_P0A970
UniRef90	UniRef90_A0A099N2Z9

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock DNA-binding domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	1.43
Kyte-Doolittle Hydrophobicity Value	-0.271
Molecular Weight (kDa)	9.0
Isoelectric Point (pI)	8.47

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 501 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: B479_17015 Search term: cold-shock DNA-binding domain-containing protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 6.0e-06 Percent Identity: 29.5
Ensembl 110, assembly GRCh38.p14	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 6.0e-06 Percent Identity: 29.5

References