Pseudomonas putida HB3267, B479_20720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_20720
Name
Replicon chromosome
Genomic location 4558851 - 4561085 (- strand)

Cross-References

RefSeq YP_007230977.1
GI 431804074
Entrez 14290525
INSDC AGA75034.1
NCBI Locus Tag B479_20720
UniParc UPI0002A15E94
UniProtKB Acc L0FM85
UniProtKB ID L0FM85_PSEPU
UniRef100 UniRef100_L0FM85
UniRef50 UniRef50_B1J1C1
UniRef90 UniRef90_B0KUB2

Product

Feature Type CDS
Coding Frame 1
Product Name
beta-agarase
Synonyms
Evidence for Translation
Charge (pH 7) -9.44
Kyte-Doolittle Hydrophobicity Value -0.381
Molecular Weight (kDa) 82259.1
Isoelectric Point (pI) 5.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 31 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001008 (463 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_20720
Search term: beta-agarase

Human Homologs

References

No references are associated with this feature.