Pseudomonas putida HB3267, B479_23975

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_23975
Name
Replicon chromosome
Genomic location 5279607 - 5280149 (- strand)

Cross-References

RefSeq YP_007231627.1
GI 431804724
EC Number 3.1.-.-
Entrez 14291175
INSDC AGA75684.1
NCBI Locus Tag B479_23975
UniParc UPI0002A169D6
UniProtKB Acc L0FP08
UniProtKB ID L0FP08_PSEPU
UniRef100 UniRef100_L0FP08
UniRef50 UniRef50_Q4KJ81
UniRef90 UniRef90_Q4KJ81

Product

Feature Type CDS
Coding Frame 1
Product Name
oligoribonuclease
Synonyms
Evidence for Translation
Charge (pH 7) -5.14
Kyte-Doolittle Hydrophobicity Value -0.493
Molecular Weight (kDa) 20770.3
Isoelectric Point (pI) 5.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 216 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004566 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_23975
Search term: oligoribonuclease

Human Homologs

Ensembl 110, assembly GRCh38.p14
RNA exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:17851]
E-value: 1.3e-42
Percent Identity: 47.7

References

No references are associated with this feature.