Pseudomonas putida HB3267, B479_24220

Gene Feature Overview

Strain	Pseudomonas putida HB3267 GCF_000325725.1|latest
Locus Tag	B479_24220
Name
Replicon	chromosome
Genomic location	5340121 - 5341506 (+ strand)

Cross-References

RefSeq	YP_007231676.1
GI	431804773
Entrez	14291224
INSDC	AGA75733.1
NCBI Locus Tag	B479_24220
UniParc	UPI000217368A
UniProtKB Acc	L0FRS6
UniProtKB ID	L0FRS6_PSEPU
UniRef100	UniRef100_A0A099N4W7
UniRef50	UniRef50_P21693
UniRef90	UniRef90_A5W9Y5

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7)	7.44
Kyte-Doolittle Hydrophobicity Value	-0.021
Molecular Weight (kDa)	49.8
Isoelectric Point (pI)	8.68

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 610 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000446 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: B479_24220 Search term: ATP-dependent RNA helicase DbpA

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000374574 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.5e-60 Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14	ENSP00000463561 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.5e-60 Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14	ENSP00000352308 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.5e-60 Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14	ENSP00000464050 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.5e-60 Percent Identity: 39.3

References