Pseudomonas syringae pv. syringae B728a, Psyr_2133

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_2133
Name
Replicon chromosome
Genomic location 2493154 - 2494095 (+ strand)

Cross-References

RefSeq YP_235214.1
GI 66045373
Entrez 3367647
INSDC AAY37176.1
NCBI Locus Tag Psyr_2133
UniParc UPI000050D846
UniProtKB Acc Q4ZUJ6
UniProtKB ID Q4ZUJ6_PSEU2
UniRef100 UniRef100_Q4ZUJ6
UniRef50 UniRef50_D8IXT2
UniRef90 UniRef90_Q4ZUJ6

Product

Feature Type CDS
Coding Frame 1
Product Name
pseudouridine synthase
Synonyms
Evidence for Translation
Charge (pH 7) 1.55
Kyte-Doolittle Hydrophobicity Value -0.280
Molecular Weight (kDa) 35627.4
Isoelectric Point (pI) 7.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 560 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003402 (543 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_2133

Human Homologs

Ensembl 97, assembly GRCh38.p12
RNA pseudouridine synthase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24180]
E-value: 2.7e-12
Percent Identity: 27.4
Ensembl 97, assembly GRCh38.p12
RNA pseudouridine synthase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24180]
E-value: 2.7e-12
Percent Identity: 27.4

References

No references are associated with this feature.