Pseudomonas aeruginosa PA7, PSPA7_2585 (cspD)

Gene Feature Overview

Strain	Pseudomonas aeruginosa PA7 GCF_000017205.1|latest
Locus Tag	PSPA7_2585
Name	cspD
Replicon	chromosome
Genomic location	2608681 - 2608953 (- strand)

Cross-References

RefSeq	YP_001347949.1
GI	152988646
Entrez	5354248
NCBI Locus Tag	PSPA7_2585

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold shock domain-containing protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	-1.54
Kyte-Doolittle Hydrophobicity Value	-0.224
Molecular Weight (kDa)	9590.8
Isoelectric Point (pI)	5.63

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPA7_2585 Search term: cspD Search term: cold shock domain-containing protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000344401 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 3.4e-07 Percent Identity: 33.3
Ensembl 110, assembly GRCh38.p14	ENSP00000489735 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 3.4e-07 Percent Identity: 33.3
Ensembl 110, assembly GRCh38.p14	ENSP00000490468 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 3.4e-07 Percent Identity: 33.3

References