Pseudomonas aeruginosa PA7, PSPA7_4550 (oprD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa PA7
GCF_000017205.1|latest
Locus Tag
PSPA7_4550
Name
oprD
Replicon chromosome
Genomic location 4674381 - 4675706 (+ strand)

Cross-References

RefSeq YP_001349899.1
GI 152988809
Entrez 5358647
NCBI Locus Tag PSPA7_4550

Product

Feature Type CDS
Coding Frame 1
Product Name
basic amino acid/basic peptide/imipenem outer membrane porin OprD
Synonyms
Evidence for Translation
Charge (pH 7) -14.55
Kyte-Doolittle Hydrophobicity Value -0.474
Molecular Weight (kDa) 48.1
Isoelectric Point (pI) 4.64

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3SY7 MEMBRANE PROTEIN 07/15/11 Improved crystal structure of Pseudomonas aeruginosa OprD Pseudomonas aeruginosa 2.15 X-RAY DIFFRACTION 92.1
4FOZ PROTEIN TRANSPORT 06/21/12 Crystal Structure of OccD1 (OprD) Y282R/D307H Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 91.9
2ODJ MEMBRANE PROTEIN 12/22/06 Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.9 X-RAY DIFFRACTION 92.3

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 14 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000187 (1579 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPA7_4550
Search term: oprD

Human Homologs

References

No references are associated with this feature.