Pseudomonas aeruginosa PA7, PSPA7_4937 (sodB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa PA7
GCF_000017205.1|latest
Locus Tag
PSPA7_4937
Name
sodB
Replicon chromosome
Genomic location 5089037 - 5089618 (+ strand)

Cross-References

RefSeq YP_001350273.1
GI 152986717
Entrez 5355463
NCBI Locus Tag PSPA7_4937

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -6.39
Kyte-Doolittle Hydrophobicity Value -0.287
Molecular Weight (kDa) 21.4
Isoelectric Point (pI) 5.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3SDP OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) 05/06/91 THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 91.0
1DT0 OXIDOREDUCTASE 01/10/00 CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 92.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003959 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPA7_4937
Search term: sodB

Human Homologs

Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 3.3e-44
Percent Identity: 47.0
Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 3.3e-44
Percent Identity: 47.0

References

No references are associated with this feature.