Pseudomonas syringae pv. tomato DC3000, PSPTO_0046

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0046
NCBI Old Locus Tag	PSPTO0046
Name	Synonym: PSPTO0046
Replicon	chromosome
Genomic location	62078 - 64063 (+ strand)

Cross-References

RefSeq	NP_789906.1
GI	28867287
Entrez	1181654
INSDC	AAO53601.1
NCBI Locus Tag	PSPTO_0046
NCBI Old Locus Tag	PSPTO0046
UniParc	UPI00000082BE
UniProtKB Acc	Q88BG8
UniProtKB ID	Q88BG8_PSESM
UniRef100	UniRef100_Q88BG8
UniRef50	UniRef50_J6UC46
UniRef90	UniRef90_Q88BG8

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-11.82
Kyte-Doolittle Hydrophobicity Value	0.002
Molecular Weight (kDa)	72.2
Isoelectric Point (pI)	6.05

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 130 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003864 (108 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0046

Human Homologs

References