Pseudomonas syringae pv. tomato DC3000, PSPTO_0058

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0058
NCBI Old Locus Tag	PSPTO0058
Name	Synonym: PSPTO0058
Replicon	chromosome
Genomic location	79007 - 80794 (- strand)

Cross-References

RefSeq	NP_789918.1
GI	28867299
Entrez	1181666
INSDC	AAO53613.1
NCBI Locus Tag	PSPTO_0058
NCBI Old Locus Tag	PSPTO0058
UniParc	UPI00000082C8
UniProtKB Acc	Q88BF8
UniProtKB ID	Q88BF8_PSESM
UniRef100	UniRef100_Q88BF8
UniRef50	UniRef50_Q88BF8
UniRef90	UniRef90_Q88BF8

Product

Feature Type	CDS
Coding Frame	1
Product Name	transposase
Synonyms
Evidence for Translation
Charge (pH 7)	10.30
Kyte-Doolittle Hydrophobicity Value	-0.363
Molecular Weight (kDa)	67.5
Isoelectric Point (pI)	9.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 131 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017156 (42 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0058 Search term: transposase

Human Homologs

References