Pseudomonas syringae pv. tomato DC3000, PSPTO_0072

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0072
NCBI Old Locus TagPSPTO0072
Name
Synonym: PSPTO0072
Replicon chromosome
Genomic location 94399 - 94779 (- strand)

Cross-References

RefSeq NP_789931.1
GI 28867312
Entrez 1181680
INSDC AAO53626.1
NCBI Locus Tag PSPTO_0072
NCBI Old Locus Tag PSPTO0072
UniParc UPI00000082D5
UniProtKB Acc Q88BE5
UniProtKB ID Q88BE5_PSESM
UniRef100 UniRef100_Q88BE5
UniRef50 UniRef50_A0A0B7DKC4
UniRef90 UniRef90_A0A0B7DKC4

Product

Feature Type CDS
Coding Frame 1
Product Name
endoribonuclease L-PSP
Synonyms
Evidence for Translation
Charge (pH 7) -2.78
Kyte-Doolittle Hydrophobicity Value 0.229
Molecular Weight (kDa) 13.4
Isoelectric Point (pI) 4.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3K0T SUGAR BINDING PROTEIN 09/25/09 Crystal structure of PSPTO -PSP protein in complex with D-beta-Glucose from Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. tomato 2.1 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 538 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004908 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0072

Human Homologs

Ensembl 110, assembly GRCh38.p14
reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897]
E-value: 3.8e-25
Percent Identity: 44.0

References

No references are associated with this feature.