Strain |
Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest |
Locus Tag |
PSPTO_0089
|
NCBI Old Locus Tag | PSPTO0089 |
Name |
rpmB
Synonym: PSPTO0089 |
Replicon | chromosome |
Genomic location | 110860 - 111093 (+ strand) |
RefSeq | NP_789948.1 |
GI | 28867329 |
Entrez | 1181697 |
INSDC | AAO53643.1 |
NCBI Locus Tag | PSPTO_0089 |
NCBI Old Locus Tag | PSPTO0089 |
UniParc | UPI00000082E6 |
UniProtKB Acc | Q88BC8 |
UniProtKB ID | RL28_PSESM |
UniRef100 | UniRef100_Q48Q02 |
UniRef50 | UniRef50_Q6LVN3 |
UniRef90 | UniRef90_C1DK04 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L28
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 12.67 |
Kyte-Doolittle Hydrophobicity Value | -0.632 |
Molecular Weight (kDa) | 8.9 |
Isoelectric Point (pI) | 12.23 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 90.8 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 90.7 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 90.7 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 90.7 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 90.8 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 90.7 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 90.8 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 90.8 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 472 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004887 (528 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PSPTO_0089
Search term: rpmB
Search term: 50S ribosomal protein L28
|