Pseudomonas syringae pv. tomato DC3000, PSPTO_0111

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0111
NCBI Old Locus Tag	PSPTO0111
Name	Synonym: PSPTO0111
Replicon	chromosome
Genomic location	130125 - 131444 (+ strand)

Cross-References

RefSeq	NP_789970.1
GI	28867351
Entrez	1181719
INSDC	AAO53665.1
NCBI Locus Tag	PSPTO_0111
NCBI Old Locus Tag	PSPTO0111
UniParc	UPI00000082FC
UniProtKB Acc	Q88BA6
UniProtKB ID	Q88BA6_PSESM
UniRef100	UniRef100_Q88BA6
UniRef50	UniRef50_D7HTE2
UniRef90	UniRef90_D7HTE2

Product

Feature Type	CDS
Coding Frame	1
Product Name	sigma-54 dependent transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7)	2.23
Kyte-Doolittle Hydrophobicity Value	-0.251
Molecular Weight (kDa)	48.6
Isoelectric Point (pI)	7.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 462 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015048 (91 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0111 Search term: sigma-54 dependent transcriptional regulator

Human Homologs

References