Pseudomonas syringae pv. tomato DC3000, PSPTO_0120

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0120
NCBI Old Locus Tag	PSPTO0120
Name	Synonym: PSPTO0120
Replicon	chromosome
Genomic location	144451 - 145638 (+ strand)

Cross-References

RefSeq	NP_789979.1
GI	28867360
Entrez	1181728
INSDC	AAO53674.1
NCBI Locus Tag	PSPTO_0120
NCBI Old Locus Tag	PSPTO0120
UniParc	UPI0000008305
UniProtKB Acc	Q88B97
UniProtKB ID	Q88B97_PSESM
UniRef100	UniRef100_Q88B97
UniRef50	UniRef50_H0JF55
UniRef90	UniRef90_Q88B97

Product

Feature Type	CDS
Coding Frame	1
Product Name	membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	5.44
Kyte-Doolittle Hydrophobicity Value	0.204
Molecular Weight (kDa)	43.6
Isoelectric Point (pI)	9.62

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 25 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005018 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0120 Search term: membrane protein

Human Homologs

References