Pseudomonas syringae pv. tomato DC3000, PSPTO_0177 (def-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0177
NCBI Old Locus TagPSPTO0177
Name
def-1
Synonym: PSPTO0177
Replicon chromosome
Genomic location 198474 - 198980 (+ strand)

Cross-References

RefSeq NP_790036.1
GI 28867417
Entrez 1181785
INSDC AAO53731.1
NCBI Locus Tag PSPTO_0177
NCBI Old Locus Tag PSPTO0177
UniParc UPI000000833E
UniProtKB Acc Q88B43
UniProtKB ID DEF1_PSESM
UniRef100 UniRef100_Q88B43
UniRef50 UniRef50_Q9I7A8
UniRef90 UniRef90_Q88B43

Product

Feature Type CDS
Coding Frame 1
Product Name
polypeptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7) -4.13
Kyte-Doolittle Hydrophobicity Value -0.324
Molecular Weight (kDa) 19.2
Isoelectric Point (pI) 5.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 588 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000019 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0177
Search term: def-1

Human Homologs

References

No references are associated with this feature.