Pseudomonas syringae pv. tomato DC3000, PSPTO_0386 (epd)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0386
NCBI Old Locus Tag	PSPTO0386
Name	epd Synonym: PSPTO0386
Replicon	chromosome
Genomic location	428140 - 429183 (+ strand)

Cross-References

RefSeq	NP_790235.1
GI	28867616
Entrez	1181995
INSDC	AAO53930.1
NCBI Locus Tag	PSPTO_0386
NCBI Old Locus Tag	PSPTO0386
UniParc	UPI00000083FE
UniProtKB Acc	Q88AK4
UniProtKB ID	Q88AK4_PSESM
UniRef100	UniRef100_Q88AK4
UniRef50	UniRef50_Q3ILL8
UniRef90	UniRef90_Q88AK4

Product

Feature Type	CDS
Coding Frame	1
Product Name	D-erythrose 4-phosphate dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7)	-3.80
Kyte-Doolittle Hydrophobicity Value	-0.121
Molecular Weight (kDa)	38.3
Isoelectric Point (pI)	6.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 607 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000535 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0386 Search term: epd Search term: D-erythrose 4-phosphate dehydrogenase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000380070 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141] E-value: 2.2e-62 Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14	ENSP00000380068 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141] E-value: 2.2e-62 Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14	ENSP00000229239 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141] E-value: 2.2e-62 Percent Identity: 38.2

References