Pseudomonas syringae pv. tomato DC3000, PSPTO_0394

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0394
NCBI Old Locus Tag	PSPTO0394
Name	Synonym: PSPTO0394
Replicon	chromosome
Genomic location	433493 - 434470 (+ strand)

Cross-References

RefSeq	NP_790243.1
GI	28867624
Entrez	1182003
INSDC	AAO53938.1
NCBI Locus Tag	PSPTO_0394
NCBI Old Locus Tag	PSPTO0394
UniParc	UPI0000008406
UniProtKB Acc	Q88AJ6
UniProtKB ID	Q88AJ6_PSESM
UniRef100	UniRef100_A0A038GHE3
UniRef50	UniRef50_I1EZS2
UniRef90	UniRef90_G8Q2F1

Product

Feature Type	CDS
Coding Frame	1
Product Name	renal dipeptidase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-8.80
Kyte-Doolittle Hydrophobicity Value	-0.147
Molecular Weight (kDa)	36.0
Isoelectric Point (pI)	5.41

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
2I5G	HYDROLASE	08/24/06	Crystal strcuture of amidohydrolase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.6	X-RAY DIFFRACTION	91.1

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 277 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004953 (510 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0394 Search term: renal dipeptidase family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000458977 dipeptidase 2 [Source:HGNC Symbol;Acc:HGNC:23028] E-value: 5.1e-21 Percent Identity: 24.4
Ensembl 110, assembly GRCh38.p14	ENSP00000377430 dipeptidase 2 [Source:HGNC Symbol;Acc:HGNC:23028] E-value: 5.1e-21 Percent Identity: 24.4

References