Pseudomonas syringae pv. tomato DC3000, PSPTO_0401

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0401
NCBI Old Locus Tag	PSPTO0401
Name	Synonym: PSPTO0401
Replicon	chromosome
Genomic location	443858 - 445090 (- strand)

Cross-References

RefSeq	NP_790250.1
GI	28867631
Entrez	1182010
INSDC	AAO53945.1
NCBI Locus Tag	PSPTO_0401
NCBI Old Locus Tag	PSPTO0401
UniParc	UPI000000840D
UniProtKB Acc	Q88AI9
UniProtKB ID	Q88AI9_PSESM
UniRef100	UniRef100_Q88AI9
UniRef50	UniRef50_W9VLP0
UniRef90	UniRef90_Q88AI9

Product

Feature Type	CDS
Coding Frame	1
Product Name	iron-sulfur cluster-binding protein, Rieske family
Synonyms
Evidence for Translation
Charge (pH 7)	-3.15
Kyte-Doolittle Hydrophobicity Value	-0.381
Molecular Weight (kDa)	46.7
Isoelectric Point (pI)	6.65

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 191 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003046 (1308 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0401 Search term: iron-sulfur cluster-binding protein, Rieske family

Human Homologs

References