Pseudomonas syringae pv. tomato DC3000, PSPTO_0419

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0419
NCBI Old Locus TagPSPTO0419
Name
Synonym: PSPTO0419
Replicon chromosome
Genomic location 465161 - 465823 (+ strand)

Cross-References

RefSeq NP_790268.1
GI 28867649
Entrez 1182028
INSDC AAO53963.1
NCBI Locus Tag PSPTO_0419
NCBI Old Locus Tag PSPTO0419
UniParc UPI000000841F
UniProtKB Acc Q88AH1
UniProtKB ID Q88AH1_PSESM
UniRef100 UniRef100_Q88AH1
UniRef50 UniRef50_Q4K4B1
UniRef90 UniRef90_Q48CK5

Product

Feature Type CDS
Coding Frame 1
Product Name
TetR family transcriptional reguator
Synonyms
Evidence for Translation
Charge (pH 7) -0.68
Kyte-Doolittle Hydrophobicity Value -0.202
Molecular Weight (kDa) 25.8
Isoelectric Point (pI) 6.79

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 125 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000358 (518 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0419

Human Homologs

References

No references are associated with this feature.