Pseudomonas syringae pv. tomato DC3000, PSPTO_0438

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0438
NCBI Old Locus Tag	PSPTO0438
Name	Synonym: PSPTO0438
Replicon	chromosome
Genomic location	481854 - 483233 (+ strand)

Cross-References

RefSeq	NP_790287.1
GI	28867668
Entrez	1182047
INSDC	AAO53982.1
NCBI Locus Tag	PSPTO_0438
NCBI Old Locus Tag	PSPTO0438
UniParc	UPI0000008432
UniProtKB Acc	Q88AF2
UniProtKB ID	Q88AF2_PSESM
UniRef100	UniRef100_Q88AF2
UniRef50	UniRef50_L0GDL3
UniRef90	UniRef90_Q88AF2

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.37
Kyte-Doolittle Hydrophobicity Value	0.215
Molecular Weight (kDa)	50.1
Isoelectric Point (pI)	7.14

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 23 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000337 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0438

Human Homologs

References