Pseudomonas syringae pv. tomato DC3000, PSPTO_0460 (soxB-1)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0460
NCBI Old Locus Tag	PSPTO0460
Name	soxB-1 Synonym: PSPTO0460
Replicon	chromosome
Genomic location	504140 - 505390 (- strand)

Cross-References

RefSeq	NP_790309.1
GI	28867690
Entrez	1182069
INSDC	AAO54004.1
NCBI Locus Tag	PSPTO_0460
NCBI Old Locus Tag	PSPTO0460
UniParc	UPI0000008446
UniProtKB Acc	Q88AD2
UniProtKB ID	Q88AD2_PSESM
UniRef100	UniRef100_Q88AD2
UniRef50	UniRef50_O87388
UniRef90	UniRef90_Q9HTE8

Product

Feature Type	CDS
Coding Frame	1
Product Name	sarcosine oxidase, beta subunit
Synonyms
Evidence for Translation
Charge (pH 7)	7.17
Kyte-Doolittle Hydrophobicity Value	-0.179
Molecular Weight (kDa)	45.3
Isoelectric Point (pI)	8.46

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 295 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004970 (512 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0460 Search term: soxB-1 Search term: sarcosine oxidase, beta subunit

Human Homologs

References