Pseudomonas syringae pv. tomato DC3000, PSPTO_0518

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0518
NCBI Old Locus Tag	PSPTO0518
Name	Synonym: PSPTO0518
Replicon	chromosome
Genomic location	565932 - 567566 (- strand)
Comment

Cross-References

RefSeq	NP_790366.1
GI	28867747
Entrez	1182127
INSDC	AAO54061.1
NCBI Locus Tag	PSPTO_0518
NCBI Old Locus Tag	PSPTO0518
UniParc	UPI000000847D
UniProtKB Acc	Q88A77
UniProtKB ID	Q88A77_PSESM
UniRef100	UniRef100_Q88A77
UniRef50	UniRef50_B3IVI6
UniRef90	UniRef90_D7I5Z1

Product

Feature Type	CDS
Coding Frame	1
Product Name	Lysine monoxygenase, putative
Synonyms	tryptophan 2-monooxygenase
Evidence for Translation
Charge (pH 7)	-10.28
Kyte-Doolittle Hydrophobicity Value	-0.233
Molecular Weight (kDa)	60.7
Isoelectric Point (pI)	5.85

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 56 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015101 (190 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0518 Search term: Lysine monoxygenase, putative

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000342557 interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094] E-value: 1.0e-13 Percent Identity: 24.0
Ensembl 110, assembly GRCh38.p14	ENSP00000375702 interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094] E-value: 1.0e-13 Percent Identity: 24.0
Ensembl 110, assembly GRCh38.p14	ENSP00000472474 interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094] E-value: 1.0e-13 Percent Identity: 24.0

References