Pseudomonas syringae pv. tomato DC3000, PSPTO_0564

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0564
NCBI Old Locus Tag	PSPTO0564
Name	Synonym: PSPTO0564
Replicon	chromosome
Genomic location	619844 - 621091 (+ strand)

Cross-References

RefSeq	NP_790411.1
GI	28867792
Entrez	1182174
INSDC	AAO54106.1
NCBI Locus Tag	PSPTO_0564
NCBI Old Locus Tag	PSPTO0564
UniParc	UPI00000084A9
UniProtKB Acc	Q88A33
UniProtKB ID	Q88A33_PSESM
UniRef100	UniRef100_Q88A33
UniRef50	UniRef50_D3P3T7
UniRef90	UniRef90_Q88A33

Product

Feature Type	CDS
Coding Frame	1
Product Name	polyamine ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7)	8.61
Kyte-Doolittle Hydrophobicity Value	0.567
Molecular Weight (kDa)	45.8
Isoelectric Point (pI)	9.45

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 375 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000588 (518 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0564 Search term: polyamine ABC transporter permease

Human Homologs

References