Pseudomonas syringae pv. tomato DC3000, PSPTO_0566 (rpe)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0566
NCBI Old Locus TagPSPTO0566
Name
rpe
Synonym: PSPTO0566
Replicon chromosome
Genomic location 622080 - 622754 (+ strand)

Cross-References

RefSeq NP_790413.1
GI 28867794
Entrez 1182176
INSDC AAO54108.1
NCBI Locus Tag PSPTO_0566
NCBI Old Locus Tag PSPTO0566
UniParc UPI00000084AB
UniProtKB Acc Q88A31
UniProtKB ID Q88A31_PSESM
UniRef100 UniRef100_Q88A31
UniRef50 UniRef50_P40117
UniRef90 UniRef90_Q88A31

Product

Feature Type CDS
Coding Frame 1
Product Name
ribulose-phosphate 3-epimerase
Synonyms
Evidence for Translation
Charge (pH 7) -7.86
Kyte-Doolittle Hydrophobicity Value 0.178
Molecular Weight (kDa) 24.3
Isoelectric Point (pI) 4.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7U5Y ISOMERASE 03/02/22 Crystal structure of ribulose-phosphate 3-epimerase from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 2.55 X-RAY DIFFRACTION 90.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 594 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000590 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0566
Search term: rpe

Human Homologs

Ensembl 110, assembly GRCh38.p14
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:HGNC:10293]
E-value: 1.5e-40
Percent Identity: 42.0

References

No references are associated with this feature.