Pseudomonas syringae pv. tomato DC3000, PSPTO_0816

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0816
NCBI Old Locus Tag	PSPTO0816
Name	Synonym: PSPTO0816
Replicon	chromosome
Genomic location	881303 - 881704 (+ strand)

Cross-References

RefSeq	NP_790663.1
GI	28868044
Entrez	1182441
INSDC	AAO54358.1
NCBI Locus Tag	PSPTO_0816
NCBI Old Locus Tag	PSPTO0816
UniParc	UPI00000085A2
UniProtKB Acc	Q889D4
UniProtKB ID	Q889D4_PSESM
UniRef100	UniRef100_Q889D4
UniRef50	UniRef50_Q5P0Y6
UniRef90	UniRef90_Q889D4

Product

Feature Type	CDS
Coding Frame	1
Product Name	type IV pilus biogenesis protein
Synonyms
Evidence for Translation
Charge (pH 7)	3.92
Kyte-Doolittle Hydrophobicity Value	0.071
Molecular Weight (kDa)	14.1
Isoelectric Point (pI)	9.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Extracellular Class 3 20472543 Fimbrial Note: This is based on PSORTb V3.0 secondary localization prediction Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 197 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004215 (429 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0816 Search term: type IV pilus biogenesis protein

Human Homologs

References