Pseudomonas syringae pv. tomato DC3000, PSPTO_0939

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0939
NCBI Old Locus Tag	PSPTO0939
Name	Synonym: PSPTO0939
Replicon	chromosome
Genomic location	1017283 - 1017960 (+ strand)

Cross-References

RefSeq	NP_790778.1
GI	28868159
Entrez	1182568
INSDC	AAO54473.1
NCBI Locus Tag	PSPTO_0939
NCBI Old Locus Tag	PSPTO0939
UniParc	UPI000000860D
UniProtKB Acc	Q888S7
UniProtKB ID	Q888S7_PSESM
UniRef100	UniRef100_Q888S7
UniRef50	UniRef50_A0A085I7D7
UniRef90	UniRef90_Q48NA8

Product

Feature Type	CDS
Coding Frame	1
Product Name	HAD-superfamily hydrolase
Synonyms
Evidence for Translation
Charge (pH 7)	11.56
Kyte-Doolittle Hydrophobicity Value	-0.226
Molecular Weight (kDa)	25.4
Isoelectric Point (pI)	10.30

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 70 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005078 (380 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0939 Search term: HAD-superfamily hydrolase

Human Homologs

References